Identifying prognostic variables that work cooperatively with known factors may improve the identification of patients

Importantly, many empirically derived clinical signatures are specific to a single cancer type and often do not provide insight into relevant biological pathways affecting cancer prognosis. We utilized an experimental model of TNF-a-mediated inflammation to characterize inflammatory gene expression in tumor-associated endothelial cells. In this study, we demonstrate that the induction of inflammatory gene expression in tumor-associated endothelial cells significantly accelerates the growth of human tumors. Notably, we derive the first cancer gene signature associated with endothelial inflammation that predicts clinical outcome in four types of human cancers independently of standard clinical and pathological prognostic factors. Our findings provide a new biologically derived method of cancer prognostication and suggest potential pathways for the development of anti-cancer therapies targeting the tumor stroma. These findings suggest that endothelial inflammation is a mediator of tumor growth and progression. In support of this hypothesis, we demonstrate that the disruption of stromal TNF-a signaling suppresses inflammatory gene expression in tumorassociated endothelial cells and significantly impairs tumor growth. We further show that conditioned culture media from human endothelial cells activated by pro-inflammatory cytokines acceler ates the growth of human tumors in immunodeficient mice. Finally, we derive a molecular signature PI-103 reflective of tumor endothelial inflammatory gene expression that is highly predictive of poor clinical outcome in four types of human cancer. Concordant with our experimental model, patients with tumors that expressed these inflammatory genes had significantly larger primary tumors of higher histological grade. Molecular signatures discovered through gene expression profiling have been shown to add prognostic value to clinical and pathological findings in several human cancers. At higher risk for relapse and death. Recently, several studies have identified host stromal signatures, either in purified stromal cells or from whole tumor samples, as significant prognostic factors in multiple types of human cancer including breast cancer, lung cancer, gastric cancer, prostate cancer, and lymphomas. Finak et al used laser capture microdissection of primary breast tumors to construct a stroma-derived prognostic signature that predicted poor outcome in whole tumor-derived expression datasets. The authors found that poor outcome was strongly linked to the expression of numerous endothelial-derived genes and that patient samples within the poor outcome group had a significantly greater endothelial content than those in the good outcome group. Furthermore, Lenz et al profiled gene expression in biopsy specimens from patients with diffuse large B-cell lymphoma and identified a highly prognostic stromal signature in patients with adverse outcome that was largely comprised of well-known endothelial markers. As well, Saadi et al demonstrated that the progression from pre-malignant disease to esophageal adenocarcinoma was associated with a marked expression of inflammatory mediators in LCM stromal cells compromised, in part, by endothelial cells. These studies highlight the role of non-malignant tumor-infiltrating stromal cells in the prognosis of human cancers. In this regard, most tumor biopsies contain a significant fraction of stromal cells. Therefore, signatures derived from whole tumor specimens reflect both tumor and stromal expression patterns.

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